NanoJ-VirusMapper

NanoJ-VirusMapper is a high-throughput, open-source ImageJ plugin for single-particle analysis in fluorescence microscopy, particularly super-resolution microscopy. It provides a platform for automatic statistical mapping of conserved multi-molecular structures, such as viral substructures or intact viruses. VirusMapper uses naive averaging to create models of the distribution of particular labelled species within larger structures.

🔗Source-Code Repository

Main publication:

VirusMapper: open-source nanoscale mapping of viral architecture through super-resolution microscopy *Robert DM Gray*, Corina Beerli, *Pedro Matos Pereira*, Kathrin Maria Scherer, *Jerzy Samolej*, Christopher Karl Ernst Bleck, Jason Mercer, *Ricardo Henriques* Published in Scientific reports, July 2016 (see publication) Research themes: New Methods, Software Type: Paper, Corresponding author

Other publications using resource:

The proteasome controls ESCRT-III–mediated cell division in an archaeon Gabriel Tarrason Risa, Fredrik Hurtig, Sian Bray, Anne E Hafner, Lena Harker-Kirschneck, Peter Faull, Colin Davis, Dimitra Papatziamou, Delyan R Mutavchiev, Catherine Fan, Leticia Meneguello, Andre Arashiro Pulschen, Gautam Dey, *Siân Culley*, Mairi Kilkenny, Diorge P Souza, Luca Pellegrini, Robertus AM de Bruin, *Ricardo Henriques*, Ambrosius P Snijders, Anđela Šarić, Ann-Christin Lindås, Nicholas P Robinson, Buzz Baum Published in Science, August 2020 (see publication or preprint) Research themes: Cell Division Type: Paper

Nanoscale polarization of the entry fusion complex of vaccinia virus drives efficient fusion *Robert DM Gray*, *David Albrecht*, Corina Beerli, Moona Huttunen, Gary H Cohen, Ian J White, Jemima J Burden, *Ricardo Henriques*, Jason Mercer Published in Nature microbiology, July 2019 (see publication) Research themes: Host-Pathogen Interactions, Microbiology, Structural Biology Type: Paper, Corresponding author

NanoJ: a high-performance open-source super-resolution microscopy toolbox *Romain F Laine*, *Kalina L Tosheva*, *Nils Gustafsson*, *Robert DM Gray*, *Pedro Almada*, *David Albrecht*, Gabriel T Risa, Fredrik Hurtig, Ann-Christin Lindås, Buzz Baum, Jason Mercer, Christophe Leterrier, *Pedro M Pereira*, *Siân Culley*, *Ricardo Henriques* Published in Journal of Physics D: Applied Physics, February 2019 (see publication) Research themes: New Methods, Software Type: Paper, Corresponding author

Septins recognize and entrap dividing bacterial cells for delivery to lysosomes Sina Krokowski, Damián Lobato-Márquez, Arnaud Chastanet, *Pedro Matos Pereira*, Dimitrios Angelis, Dieter Galea, Gerald Larrouy-Maumus, *Ricardo Henriques*, Elias T Spiliotis, Rut Carballido-López, Serge Mostowy Published in Cell host & microbe, December 2018 (see publication) Research themes: Host-Pathogen Interactions, Microbiology Type: Paper

Open-source single-particle analysis for super-resolution microscopy with VirusMapper *Robert DM Gray*, Jason Mercer, *Ricardo Henriques* Published in JoVE (Journal of Visualized Experiments), April 2017 (see publication) Research themes: Microbiology, Structural Biology, New Methods, Software Type: Paper, Corresponding author