Software

Team members:

Collaborators:

Alan Lowe

Artificial Intelligence for Quantitative Biology Lab, University College London, UK

Buzz Baum

Cell Morphogenesis Lab, University College London, UK

Bassam Hajj

Cell Organization Imaging and Control Lab, Institut Curie, France

Ed Cohen

Cohen Group, Imperial College London, UK

Joe Grove

Grove Lab, University College London, UK

Johanna Ivaska

Cell Adhesion and Cancer Adhesion Lab, University of Turku, Finland

Jason Mercer

Viral Cell Biology Lab, University of Birmingham, UK

Lucy Collinson

Electron Microscopy Science Technology Platform, Francis Crick Institute, UK

Musa Mhlanga

Gene Expression & Biophysics Lab, University of Cape Town, South Africa

Publications:

ZeroCostDL4Mic: an open platform to simplify access and use of Deep-Learning in Microscopy
*Lucas von Chamier*, Johanna Jukkala, *Christoph Spahn*, Martina Lerche, Sara Hernández-pérez, Pieta Mattila, Eleni Karinou, Seamus Holden, Ahmet Can Solak, Alexander Krull, Tim-Oliver Buchholz, Florian Jug, Loïc Alain Royer, Mike Heilemann, *Romain F. Laine*, Guillaume Jacquemet, *Ricardo Henriques*
Published in bioRxiv, March 2020 (see preprint)
Research themes: New Methods, Software
Type: Preprint, Corresponding author
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software
Daniel Sage, Thanh-An Pham, Hazen Babcock, Tomas Lukes, Thomas Pengo, Jerry Chao, Ramraj Velmurugan, Alex Herbert, Anurag Agrawal, Silvia Colabrese, Ann Wheeler, Anna Archetti, Bernd Rieger, Raimund Ober, Guy M Hagen, Jean-Baptiste Sibarita, Jonas Ries, *Ricardo Henriques*, Michael Unser, Seamus Holden
Published in Nature methods, May 2019 (see publication)
Research themes: New Methods, Software
Type: Paper
Content-aware image restoration: pushing the limits of fluorescence microscopy
Martin Weigert, Uwe Schmidt, Tobias Boothe, Andreas Müller, Alexandr Dibrov, Akanksha Jain, Benjamin Wilhelm, Deborah Schmidt, Coleman Broaddus, *Siân Culley*, Mauricio Rocha-Martins, Fabián Segovia-Miranda, Caren Norden, *Ricardo Henriques*, Marino Zerial, Michele Solimena, Jochen Rink, Pavel Tomancak, Loic Royer, Florian Jug, Eugene W Myers
Published in Nature methods, December 2018 (see publication)
Research themes: New Methods, Software
Type: Paper