ZeroCostDL4Mic

ZeroCostDL4Mic is a collection of self-explanatory Jupyter Notebooks for Google Colab that features an easy-to-use graphical user interface. They are meant to quickly get you started on learning to use deep-learning for microscopy. Google Colab itself provides the computations resources needed at no-cost. ZeroCostDL4Mic is designed for researchers that have little or no coding expertise to quickly test, train and use popular Deep-Learning networks.

🔗Source-Code Repository

Main publication:

Other publications using resource:

DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches *Christoph Spahn*, *Estibaliz Gómez-de-Mariscal*, *Romain F Laine*, *Pedro M Pereira*, *Lucas von Chamier*, Mia Conduit, Mariana G Pinho, Guillaume Jacquemet, Séamus Holden, Mike Heilemann, *Ricardo Henriques* Published in Nature Communications Biology, July 2022 (see publication) Research themes: New Methods, Software Type: Paper, Corresponding author

BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis Wei Ouyang, Fynn Beuttenmueller, *Estibaliz Gómez-de-Mariscal*, Constantin Pape, Tom Burke, Carlos Garcia-López-de-Haro, Craig Russell, Lucía Moya-Sans, Cristina de-la-Torre-Gutiérrez, Deborah Schmidt, Dominik Kutra, Maksim Novikov, Martin Weigert, Uwe Schmidt, Peter Bankhead, Guillaume Jacquemet, Daniel Sage, *Ricardo Henriques*, Arrate Muñoz-Barrutia, Emma Lundberg, Florian Jug, Anna Kreshuk Published in bioRxiv, June 2022 (see preprint) Research themes: New Methods, Software Type: Preprint

Avoiding a replication crisis in deep-learning-based bioimage analysis *Romain F Laine*, Ignacio Arganda-Carreras, *Ricardo Henriques*, Guillaume Jacquemet Published in Nature methods, October 2021 (see publication) Research themes: New Methods, Software Type: Paper

Democratising deep learning for microscopy with ZeroCostDL4Mic *Lucas von Chamier*, *Romain F Laine*, Johanna Jukkala, *Christoph Spahn*, Daniel Krentzel, Elias Nehme, Martina Lerche, Sara Hernández-Pérez, Pieta K Mattila, Eleni Karinou, Séamus Holden, Ahmet Can Solak, Alexander Krull, Tim-Oliver Buchholz, Martin L Jones, Loïc A Royer, Christophe Leterrier, Yoav Shechtman, Florian Jug, Mike Heilemann, Guillaume Jacquemet, *Ricardo Henriques* Published in Nature communications, April 2021 (see publication) Research themes: New Methods, Software Type: Paper, Corresponding author