nanopyx.data

Contains helper methods for downloading and loading example test data

>>> from nanopyx.data.download import ExampleDataManager
>>> downloader = ExampleDataManager()
>>> datasets = downloader.list_datasets()
>>> print("\n".join([" - "+dataset for dataset in datasets]))
 - Cell1_STORM_COS7_IC
 - Cell2_STORM_COS7_IC
 - Cell2_TIRF_COS7_IC
 - ImmunoSynapseFormation_LifeActGFP
 - LongContinuous_UtrGFP
 - MTsGFP_EMBO_AdvMicroscopy_2018
 - PumpyCos7_UtrGFP
 - SMLMS2013_HDTubulinAlexa647
 - SM_U2OS_Pereira_MTAlexaA647_V1
 - SM_U2OS_Pereira_MTAlexaA647_V2
 - ShortContinuous_UtrGFP
 - VirusMapper_ViralParticles_Channel1
 - VirusMapper_ViralParticles_Channel2
 - VirusMapper_ViralParticles_Frontal_Seed-Average_Ch1
 - VirusMapper_ViralParticles_Frontal_Seed-Average_Ch2
 - VirusMapper_ViralParticles_Sagittal_Seed-Average_Ch1
 - VirusMapper_ViralParticles_Sagittal_Seed-Average_Ch2
>>> thumbnail_path = downloader.get_thumbnail("LongContinuous_UtrGFP")
>>> import os
>>> "/".join(["..."]+thumbnail_path.split(os.path.sep)[-5:])
'.../nanopyx/data/examples/LongContinuous_UtrGFP/thumbnail.jpg'

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 1"""
 2Contains helper methods for downloading and loading example test data
 3
 4>>> from nanopyx.data.download import ExampleDataManager
 5>>> downloader = ExampleDataManager()
 6>>> datasets = downloader.list_datasets()
 7>>> print("\\n".join([" - "+dataset for dataset in datasets]))
 8 - Cell1_STORM_COS7_IC
 9 - Cell2_STORM_COS7_IC
10 - Cell2_TIRF_COS7_IC
11 - ImmunoSynapseFormation_LifeActGFP
12 - LongContinuous_UtrGFP
13 - MTsGFP_EMBO_AdvMicroscopy_2018
14 - PumpyCos7_UtrGFP
15 - SMLMS2013_HDTubulinAlexa647
16 - SM_U2OS_Pereira_MTAlexaA647_V1
17 - SM_U2OS_Pereira_MTAlexaA647_V2
18 - ShortContinuous_UtrGFP
19 - VirusMapper_ViralParticles_Channel1
20 - VirusMapper_ViralParticles_Channel2
21 - VirusMapper_ViralParticles_Frontal_Seed-Average_Ch1
22 - VirusMapper_ViralParticles_Frontal_Seed-Average_Ch2
23 - VirusMapper_ViralParticles_Sagittal_Seed-Average_Ch1
24 - VirusMapper_ViralParticles_Sagittal_Seed-Average_Ch2
25>>> thumbnail_path = downloader.get_thumbnail("LongContinuous_UtrGFP")
26>>> import os
27>>> "/".join(["..."]+thumbnail_path.split(os.path.sep)[-5:])
28'.../nanopyx/data/examples/LongContinuous_UtrGFP/thumbnail.jpg'
29"""