DL4MicEverywhere / fnet-2d-zerocostdl4mic / 1.14.1

fnet-2d-zerocostdl4mic implementation.

Paired image-to-image translation of 2D images. Label-free Prediction (fnet) is a neural network used to infer the features of cellular structures from brightfield or EM images without coloured labels. The network is trained using paired training images from the same field of view, imaged in a label-free (e.g. brightfield) and labelled condition (e.g. fluorescent protein). When trained, this allows the user to identify certain structures from brightfield images alone. The performance of fnet may depend significantly on the structure at hand. Note - visit the ZeroCostDL4Mic wiki to check the original publications this network is based on and make sure you cite these.
Tags
AMD64colabnotebookdenoisingZeroCostDL4Mic
Citation
https://doi.org/10.1038/s41467-021-22518-0von Chamier, L., Laine, R.F., Jukkala, J. et al. Democratising deep learning for microscopy with ZeroCostDL4Mic. Nat Commun 12, 2276 (2021). https://doi.org/10.1038/s41467-021-22518-0
https://doi.org/10.1038/s41592-018-0111-2Ounkomol, C., Seshamani, S., Maleckar, M.M. et al. Label-free prediction of three-dimensional fluorescence images from transmitted-light microscopy. Nat Methods 15, 917–920 (2018). https://doi.org/10.1038/s41592-018-0111-2
Solution written by
DL4MicEverywhere team
album team

Arguments

--path
What is your working path? (default value: .)

Usage instructions

Please follow this link for details on how to install and run this solution.