DL4MicEverywhere / deep-storm-2d-zerocostdl4mic / 1.13.3

deep-storm-2d-zerocostdl4mic implementation.

Single Molecule Localization Microscopy (SMLM) image reconstruction from high-density emitter data. Deep-STORM is a neural network capable of image reconstruction from high-density single-molecule localization microscopy (SMLM), first published in 2018 by Nehme et al. in Optica. This network allows image reconstruction of 2D super-resolution images, in a supervised training manner. The network is trained using simulated high-density SMLM data for which the ground-truth is available. These simulations are obtained from random distribution of single molecules in a field-of-view and therefore do not imprint structural priors during training. The network output a super-resolution image with increased pixel density (typically upsampling factor of 8 in each dimension). Note - visit the ZeroCostDL4Mic wiki to check the original publications this network is based on and make sure you cite these.
Tags
AMD64colabnotebookdenoisingZeroCostDL4Mic2D
Citation
https://doi.org/10.1038/s41467-021-22518-0von Chamier, L., Laine, R.F., Jukkala, J. et al. Democratising deep learning for microscopy with ZeroCostDL4Mic. Nat Commun 12, 2276 (2021). https://doi.org/10.1038/s41467-021-22518-0
https://doi.org/10.1364/OPTICA.5.000458Elias Nehme, Lucien E. Weiss, Tomer Michaeli, and Yoav Shechtman. Deep-STORM: super-resolution single-molecule microscopy by deep learning. Optica 5, 458-464 (2018)
Solution written by
DL4MicEverywhere team
album team

Arguments

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Usage instructions

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